| Main use-cases | MOI estimation, reconstruction of SNP haplotypes |
| Authors | Nianqiao Ju, Jiawei Liu, Qixin He |
| Latest version | 2024-04-30 |
| License | GPL-3.0 |
| Website | https://www.google.com |
| Code repository | https://github.com/nianqiaoju/snp-slice |
| Publication | https://academic.oup.com/bioinformatics/article/40/6/btae344/7695237#467922339 |
| Tutorial authors | TODO |
| Tutorial date | TODO |
SNP-slice
Summary sheet
Purpose
The SNP-slice algorithm enables reconstruction of SNP haplotypes from bi-allelic data, allowing for inference of haplotype/strain frequencies.
Existing resources
The SNP-slice GitHub repository includes scripts for implementing the SNP-slice algorithm, as well as scripts for analyzing output and generating figures.
Citation
The publication associated with the SNP-slice algorithm and analysis scripts can be found here (Ju et al 2024 Bioinformatics).