paneljudge

Summary sheet

Main use-cases,barcode/panel assessment

Authors,Aimee Taylor & Pierre Jacob

Latest version,0.0.0.9000

License,MIT

Website,https://github.com/aimeertaylor/paneljudge

Code repository,https://github.com/aimeertaylor/paneljudge

Publication,https://pubmed.ncbi.nlm.nih.gov/35437908/

Tutorial authors,Nick Brazeau

Tutorial date,Dec 12 2023

Purpose

An R package that judges the “informativeness” of a genetic panel (or barcode) in its ability to infer relatedness. The panel is assessed under simulation with an identity-by-descent hidden-markov model backend. Precision in relatedness estimates indicate the superior panel.

Existing resources

Taylor et al. Genetics 212.4 (2019): 1337-1351.
Schaffner et al. Malaria journal 17.1 (2018): 196.

Citation

LaVerriere et al., Molecular Ecology Resources 22.6 (2022): 2285-2303

BibTeX style citation. For an R package, you can get this using citation(package = "name"):

Here is an example for DRpower, using citation(package = "paneljudge"):

@Manual{,
    title = {paneljudge: Judge the performance of a panel of genetic markers using
simulated data},
    author = {Aimee Taylor and Pierre Jacob},
    year = {2023},
    note = {R package version 0.0.0.9000},
  }