All functions

acf_data()

Estimate autocorrelation

check_drjacoby_loaded()

Check that drjacoby package has loaded successfully

cpp_template()

Create template for cpp

define_params()

Define parameters dataframe

drjacoby

Flexible Markov Chain Monte Carlo via Reparameterization

gelman_rubin()

Gelman-Rubin statistic

plot_autocorrelation()

Plot autocorrelation

plot_cor_mat()

Plot posterior correlation matrix

plot_credible()

Plot 95% credible intervals

plot_mc_acceptance()

Plot Metropolis coupling acceptance rates

plot_pairs()

Produce scatterplots between multiple parameters

plot_rung_loglike()

Plot loglikelihood 95% credible intervals

plot_scatter()

Produce bivariate scatterplot

plot_trace()

Plot parameter trace

population_data

Population data.

run_mcmc()

Run drjacoby MCMC

sample_chains()

Sample posterior draws from all available chains