All functions

acf_data()

Estimate autocorrelation

check_drjacoby_loaded()

Check that drjacoby package has loaded successfully

check_likelihood_compilation()

Check Cpp loglikelihood function

check_prior_compilation()

Check Cpp logprior function

drjacoby

Flexible Markov Chain Monte Carlo via Reparameterization

drjacoby_cols()

Series of standard colours used within the drjacoby package

gelman_rubin()

Gelman-Rubin statistic

get_theta_rungs()

Extract theta into list of matrices over rungs

plot_autocorrelation()

Plot autocorrelation

plot_contour()

Contour plot of two parameters

plot_cor()

Plot parameter correlation

plot_mc_acceptance()

Plot Metropolis coupling acceptance rates

plot_par()

Plot parameter estimates

plot_rung_loglike()

Plot loglikelihood 95% credible intervals

run_mcmc()

Run drjacoby MCMC

sample_chains()

Sample N draws from all available chains