Plot Metropolis coupling acceptance rates

Source: R/plot.R

Plot Metropolis coupling acceptance rates between all rungs.

plot_mc_acceptance(x, chain = NULL, phase = "sampling", x_axis_type = 1)

Arguments

x

an object of class drjacoby_output

chain

which chain to plot. If NULL then plot all chains.

phase

which phase to plot. Must be either "burnin" or "sampling".

x_axis_type

how to format the x-axis. 1 = integer rungs, 2 = values of the thermodynamic power.