Agenda
Dates: 24–25 March 2025
Day 1: Introducing the Tools and Applications
09:00 - 09:30 Registration & Coffee
09:30 - 09:45 Welcome and opening remarks – (Slides)
09:45 – 11:15 Building a model with odin
– (Slides)
- Hands on basic introduction
odin
: building some simple epidemiological models from scratch - A hands-on session (via posit cloud or your own laptop) where we will build a model and add increasing realism
11:15 - 11:30 Coffee Break
11:30 - 12:45 Case studies
- Chemical Kinetics Modelling - Leonie Lorenz (EMBL-EBI)
- Covid 19 pandemic in French Polynesia – Lloyd Chapman (Lancaster)
- Modelling mpox - Ed Knock (Imperial)
12:45 - 13:45 Lunch Break
13:45 - 15:00 Inference with monty
– (Slides) – Chair Peter Winskill
- Hands-on introduction to inference
- Connecting odin models to data, and infering parameters with MCMC
- Collect information on hidden models states while running models
- Running counterfactuals and simulations
15:00 - 15:30 Coffee Break
15:30 - 16:45 Lightning talks
- Applications in practice (Hybrid)
- Short 2 minutes presentations from participants (online + in-person)
- Open to additional registered online attendees
17:00 - 18:30 Department reception (open to all)
- Informal networking, drinks, and snacks
19:00 - Late Workshop dinner at The Broadcaster (Limited numbers)
Day 2: Feedback, Development, and Support
09:00 - 9:30 Coffee & networking
09:30 - 10:45 Feedback in small groups - Chair Thomas Rawson
- Participants discuss specific challenges using
odin
/monty
- Guided feedback on:
- Interface design
- Development priorities
- Documentation priorities
- Work practice
- Speeding up model development
10:45 - 11:15 Coffee Break
11:15 - 12:30 Future of the Tools – Chair Katy Gaythorpe – (Slides)
- Priorities and Roadmap - Rich FitzJohn
- New and upcoming features:
- GPU/HPC integration - Rich FitzJohn
- Gradient methods and autodiff - Marc Baguelin
- Parallel tempering - Robert Verity
- Survey “Out of 1-10” priorities with menti
- Roadmap and new features based on collected feedback
- Open discussion
12:30 - 14:00 Extended lunch Break and drop-in session from 13:00
14:00 - 15:00 Teaching & Learning with wodin – Chair Pablo Perez Guzman
- Hurdles in learning & accessibility for teaching infectious disease modelling - Julia Halder
- Enhancing teaching with wodin: A web-based approach to modelling - Charlie Whittaker
- wodin for policy scenario - OJ Watson
- Open discussion
15:00 - 15:30 Closing remarks and thanks
- Summary of workshop outcomes
- Next steps and continued collaboration plans