Parameterise age grouped output rendering

Parameterise age grouped output rendering

set_epi_outputs(
  parameters,
  age_group = NULL,
  incidence = NULL,
  clinical_incidence = NULL,
  severe_incidence = NULL,
  prevalence = NULL,
  ica = NULL,
  icm = NULL,
  iva = NULL,
  ivm = NULL,
  id = NULL,
  ib = NULL
)

Arguments

parameters

the model parameters

age_group

age breaks for population size outputs; default = NULL

incidence

age breaks for incidence outputs (D+Tr+A); default = NULL

clinical_incidence

age breaks for clinical incidence outputs (symptomatic); default = c(0, 1825)

severe_incidence

age breaks for severe incidence outputs; default = NULL

prevalence

age breaks for clinical prevalence outputs (pcr and lm detectable infections); default = c(730, 3650)

ica

age breaks for average acquired clinical immunity; default = NULL

icm

age breaks for average maternal clinical immunity; default = NULL

iva

age breaks for average acquired severe immunity; default = NULL

ivm

age breaks for average maternal severe immunity; default = NULL

id

age breaks for average immunity to detectability; default = NULL

ib

age breaks for average blood immunity; default = NULL

Details

this function produces contiguous age groups, inclusive of the lower age limit and exclusive of the upper age limit: e.g., c(0, 10, 100) will produce two age groups: 0-9 and 10-99 in days.