24-SNP barcode data showing monogenomic and polygenomic infections in Senegal (Galinsky et al., 2015)

Data from Galinsky et al. (2015). Here we give a brief summary of the data - see the original paper for full details.

Samples are an expanded set of those present in another dataset (see ?Daniels_2013 for further details of sample collection). The difference is that samples here also include those that are likely polygenomic infections.

data(Galinsky_2015)

Format

A dataframe with 26 columns, giving the sample ID and collection year (columns 1:2), and genotype calls at all 24 SNP loci (columns 3:26). Heterozygous genotyping calls are identified by "N", and missing alleles are identified by "X".

Source

Supplementary materials

References

Galinsky K, Valim C, Salmier A, de Thoisy B, Musset L, Legrand E, Faust A, Baniecki ML, Ndiaye D, Daniels RF, Hartl DL, Sabeti PC, Wirth DF, Volkman SK, Neafsey DE (2015). “COIL: a methodology for evaluating malarial complexity of infection using likelihood from single nucleotide polymorphism data.” Malaria Journal, 14(1), 4. ISSN 1475-2875, doi: 10.1186/1475-2875-14-4 , https://malariajournal.biomedcentral.com/articles/10.1186/1475-2875-14-4.