24-SNP barcode data from two urban cities in Nigeria (Bankole et al., 2018)

Data from Bankole et al. (2018). Here we give a brief summary of the data - see the original paper for full details.

Samples were obtained from two major urban cities, Ibadan and Enugu in Nigeria, both high transmission settings. DNA was extracted from dried blood impregnated filter paper and samples were genotyped using a 24-SNP barcode. Samples were considered polygenomic if they had more than 2 heterozygous sites (Enugu = 5/28, Ibadan = 5/37), and monogenomic otherwise. Data were extracted using Tabula v1.2.1.

data(Bankole_2018)

Format

A dataframe with 27 columns, giving sample IDs and locations (columns 1:2), genotyping calls at all 24 SNPs (columns 3:26), and (unknown) (column 27). Heterozygous genotyping calls are denoted "N", and missing data is denoted "X".

Source

Data in main paper

Tabula data extractor

References

Bankole BE, Kayode AT, Nosamiefan IO, Eromon P, Baniecki ML, Daniels RF, Hamilton EJ, Durfee K, MacInnis B, Okafor H, Sowunmi A, Volkman SK, Sabeti P, Wirth D, Happi CT, Folarin OA (2018). “Characterization of Plasmodium falciparum structure in Nigeria with malaria SNPs barcode.” Malaria Journal, 17(1), 472. ISSN 1475-2875, doi: 10.1186/s12936-018-2623-8 , https://malariajournal.biomedcentral.com/articles/10.1186/s12936-018-2623-8.