All functions
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bind_data()
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Load data into RMAPI project |
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calc_hex_values()
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Partial version of rmapi_analysis - calculate hex values |
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calc_intersections()
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Partial version of rmapi_analysis - calculate intersection and weighting data for making multiple maps |
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check_RMAPI_loaded()
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Check that RMAPI package has loaded successfully |
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col_hotcold()
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Red to blue colours |
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create_map()
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Create mapping space |
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create_map2()
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Create mapping space |
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fit_model()
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Fit a simple model to data |
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fit_model2()
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Fit a simple model to data (alt) |
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get_ellipse()
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Calculate ellipse polygon coordinates from foci and eccentricity |
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get_spatial_distance()
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Get great circle distance between spatial points |
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is.rmapi_project()
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Determine if object is of class rmapi_project |
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lonlat_to_bearing()
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Calculate great circle distance and bearing between coordinates |
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overlay_points()
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Add points to dynamic map |
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plot_coverage()
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Plot hex coverage for a given eccentricity |
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plot_dist()
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Plot pairwise spatial distance against loaded statistic |
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plot_leaflet()
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Interactive hex map of RMAPI output |
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plot_map()
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Plot hex map of RMAPI output |
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plot_map2()
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Plot hex map of RMAPI output with hexes considered statistically significant highlighted |
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print_full()
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Print unclassed RMAPI project |
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RMAPI
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RMAPI |
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rmapi_analysis()
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Perform RMAPI analysis |
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rmapi_file()
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Import file |
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rmapi_project()
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Define empty RMAPI project |
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sim_falciparum()
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Simulate genetic data from simple P.falciparum dynamic model |
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sim_simple()
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Simulate data from simple model |