Function reference • squire

Running the model Running squire models and calibrating them
`run_explicit_SEEIR_model()`	Run the explicit SEEIR model
`run_simple_SEEIR_model()`	Run the SEEIR model
`calibrate()`	Calibrate via particle filter grid search using time series of deaths
`projections()`	Provide projections from calibrated simulations by changing RO, contact matrices or bed availability.
Parameters Model parameters and retrieving country demography, healthcare and mixing matrices
`parameters_explicit_SEEIR()`	Parmaters for explicit SEEIR model
`parameters_simple_SEEIR()`	Parmeters for the simple SEEIR model
`get_population()`	Get population data
`get_mixing_matrix()`	Get mixing matrix
`get_lmic_countries()`	Get supported LMIC countries
`get_healthcare_capacity()`	Get healthcare capacity data
Beta estimation Functions for estimating beta for a given R0
`beta_est_explicit()`	Estimate beta parameter for explicit model
`beta_est()`	Estimate beta for a squire model using model parameters
Model output summaries Functions for summarising the model components and plotting
`projection_plotting()`	Plot projections against each other
`format_output()`	Format model output as data.frame
`format_output_simple_model()`	Format model output from simple as data.frame

Reference