Function reference • spatialbranchr

All functions

as_dataframe(): Convert the projections to a data.frame

force_of_infection(): Force of infection under a spatially explicit brancing process model

make_rindex(): Prepare index matrix for Rt

metadata: Centroids and populations of all countries

process_spatial_estimate(): Process the spatially explicit branching process model fitted to incidence

promed_ebola: Processed data on the 2013–2016 West African Ebola epidemic

sd2(): Standard deviation with optional args

spatial_estimate(): Estimate effective reproduction number using a spatially explicit branching process model.

spatial_priors(): Default priors for parameters of a spatially explicit branching process model

spatial_project(): Project future incidence

spatialbranchr-package spatialbranchr: The 'spatialbranchr' package.

summarise_projections(): Summarise projections across simulations