spatialbranchr implements a spatially explicit branching process framework. Briefly, spatialbranchr can
jointly estimate relative movement between locations and the reproduction numbers in these locations given incidence time-series;
jointly estimate reporduction numbers in multiple locations using a spatially epxlicit branching process given time-series of incidence and information on movement;
project incidence under this framework.
The methodology is available here.
To install, use:
remotes::install_github('mrc-ide/spatialbranchr')