All functions

basic

The basic sircovid model The "basic" sircovid model. This is a dust model.

basic_compare()

Compare observed and modelled data for the basic model

basic_index()

Index of basic model

basic_initial()

Initial conditions for the basic model

basic_parameters()

Parameters for the basic model

carehomes

The carehomes sircovid model Our "current" sircovid model. This is a dust model.

carehomes_Rt()

Compute "Rt"

carehomes_Rt_trajectories()

Compute Rt for a set of trajectories

carehomes_compare()

Compare observed and modelled data for the carehomes model

carehomes_index()

Index of carehomes model

carehomes_initial()

Initial conditions for the carehomes model

carehomes_parameters()

Parameters for the carehomes model

carehomes_parameters_progression()

Carehomes progression parameters

carehomes_particle_filter()

Carehomes particle filter

sircovid_data()

Prepare data for mcstate

sircovid_date() sircovid_date_as_date() as_sircovid_date() as_date()

Date handling for sircovid2

sircovid_parameters_beta()

Construct beta array

sircovid_parameters_beta_expand()

Expand beta steps

sircovid_parameters_severity()

Process severity data