Compare observed and modelled data from the carehomes model. This
conforms to the mcstate interface.
carehomes_compare(state, prev_state, observed, pars)
Arguments
| state |
State vector for the end of the current day. This is
assumed to be filtered following carehomes_index() so contains
10 rows corresponding to ICU, general beds, admissions, deaths and
seroconversion compartments. |
| prev_state |
State vector for the end of the previous day, as
for state. |
| observed |
Observed data. This will be a list with elements
icu (number of ICU beds occupied), general (number of
general beds occupied), deaths_hosp (cumulative deaths in
hospital settings), deaths_comm (cumulative deaths in
community settings), deaths (combined deaths - used by some
nations - if given then deaths_hosp and deaths_comm must be
NA), admitted (hospital admissions), new (new cases),
npos_15_64 (number of people seropositive in ages 15-64) and
ntot_15_64 (number of people tested in ages 15-64), pillar2_pos
(number of pillar 2 positives), pillar2_tot (number of pillar 2
tests) |
| pars |
A list of parameters, as created by
carehomes_parameters() |
Value
A vector of log likelihoods, the same length as the number
of particles (the number of columns in the modelled state)