plot.nimue_simulation.Rd
nimue simulation plot
# S3 method for nimue_simulation
plot(
x,
var_select = NULL,
replicates = FALSE,
summarise = TRUE,
ci = TRUE,
q = c(0.025, 0.975),
summary_f = mean,
x_var = "t",
date_0 = NULL,
particle_fit = FALSE,
...
)
x | An squire_simulation object |
---|---|
var_select | Vector of variable names to plot (default is all) |
replicates | Plot replicates |
summarise | Logical, add summary line |
ci | logical add confidence interval ribbon |
q | Quantiles for upper and lower of interval ribbon |
summary_f | Function to summarise each compartment
passed to the |
x_var | X variable to use for plotting (default is |
date_0 | Date of time 0 (e.g. "2020-03-01"), if specified a date column will be added |
particle_fit | If the squire_simulation provided is the result of running the particle filter, do we want to just plot the fit. Default = FALSE |
... | additional arguments affecting the plot produced. |