Describe single pmcmc parameter — pmcmc

Describe a single parameter for use within the pmcmc. Note that the name is not set here, but will end up being naturally defined when used with pmcmc_parameters, which collects these together for use with pmcmc().

pmcmc_parameter(
  name,
  initial,
  min = -Inf,
  max = Inf,
  discrete,
  integer = FALSE,
  prior = NULL,
  mean = NULL
)

Arguments

name: Name for the parameter (a string)
initial: Initial value for the parameter
min: Optional minimum value for the parameter (otherwise -Inf). If given, then initial must be at least this value.
max: Optional max value for the parameter (otherwise Inf). If given, then initial must be at most this value.
discrete: Deprecated; use integer instead.
integer: Logical, indicating if this parameter is integer. If TRUE then the parameter will be rounded after a new parameter is proposed.
prior: A prior function (if not given an improper flat prior is used - be careful!). It must be a function that takes a single argument, being the value of this parameter. If given, then prior(initial) must evaluate to a finite value.
mean: Optionally, an estimate of the mean of the parameter. If not given, then we assume that initial is a reasonable estimate. This is used only in adaptive mcmc.

Examples

pmcmc_parameter("a", 0.1)
#> $name
#> [1] "a"
#> 
#> $initial
#> [1] 0.1
#> 
#> $min
#> [1] -Inf
#> 
#> $max
#> [1] Inf
#> 
#> $integer
#> [1] FALSE
#> 
#> $prior
#> function (p) 
#> 0
#> <bytecode: 0x7f7d74346de0>
#> <environment: 0x7f7d7434a078>
#> 
#> $mean
#> [1] 0.1
#> 
#> attr(,"class")
#> [1] "pmcmc_parameter"