Create table for human delay parameters

Create table for human delay parameters

Usage

delay_table(df, pathogen)

Arguments

df

processed data with parameter information produced using data_param_table()

pathogen

name of pathogen

Value

flextable with an overview of the delay parameter estimates extracted from the included studies

Examples

df <- data_param_table(pathogen = "marburg", exclude = c(15, 17))
#> Rows: 70 Columns: 55
#> ── Column specification ────────────────────────────────────────────────────────
#> Delimiter: ","
#> chr (26): parameter_data_id, parameter_type, parameter_unit, parameter_value...
#> dbl (18): article_id, parameter_value, parameter_lower_bound, parameter_uppe...
#> lgl (11): distribution_type, distribution_par1_value, distribution_par1_type...
#> 
#> ℹ Use `spec()` to retrieve the full column specification for this data.
#> ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
#> Rows: 58 Columns: 25
#> ── Column specification ────────────────────────────────────────────────────────
#> Delimiter: ","
#> chr  (8): pathogen, first_author_first_name, article_title, doi, journal, no...
#> dbl (16): article_id, covidence_id, year_publication, volume, issue, page_fi...
#> lgl  (1): paper_copy_only
#> 
#> ℹ Use `spec()` to retrieve the full column specification for this data.
#> ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
delay_table(df = df, pathogen = "marburg")
Article
Country
Parameter type
Delays (days)
Statistic
Uncertainty type
Population Group
Timing of survey
Outcome
Ajelli2012
Angola
Generation Time
9.0
Mean
CI95%
General population
Mid outbreak
Ajelli2012
Angola
Generation Time
5.4
Standard Deviation
CI95%
General population
Mid outbreak
Ajelli2012
Angola
Generation Time
9.3
Mean
CI95%
General population
Mid outbreak
Martini1973
Germany,Yugoslavia
Incubation Period
Range
Gear1975
South Africa
Incubation Period
Range
Healthcare workers
Mid outbreak
Knust2015
Uganda
Time In Care
14.3
Mean
Range
General population
Post outbreak
Other
Bausch2006
Democratic Republic of the Congo
Time Symptom To Careseeking
4.5
Median
Range
Other
Mid outbreak
Gear1975
South Africa
Time Symptom To Careseeking
4.0
Other
Other
Start outbreak
Knust2015
Uganda
Time Symptom To Careseeking
4.0
Mean
General population
Ajelli2012
Angola
Time Symptom To Outcome
7.0
Median
Range
General population
Mid outbreak
Death
Ajelli2012
Angola
Time Symptom To Outcome
9.0
Median
Range
General population
Mid outbreak
Death
Gear1975
South Africa
Time Symptom To Outcome
9.0
Other
Start outbreak
Other
Knust2015
Uganda
Time Symptom To Outcome
9.0
Mean
Range
General population
Post outbreak
Death
Knust2015
Uganda
Time Symptom To Outcome
22.0
Mean
Range
General population
Other