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Changelog

Source: NEWS.md

epireview 1.4.0

  • MAJOR RELEASE
    • Bug fixes
    • SARS-CoV-1 data release
    • Minor fixes to Ebola data

epireview 1.3.6

  • FEATURE: The default color palette is updated with a new one from ggsci and introduces a custom_palette() function to support multi-country label visualization.

  • BUG FIX: Functionality to supply custom colour palette now works as expected.

epireview 1.3.5

  • BUG-FIX: Fixes #117. NA rows were being created because filter_df_for_metamean used == to compare strings, leading to NAs being created when the RHS was NA. Comparison now is being done using %in%.

epireview 1.3.4

  • DATA: Adds SARS-CoV-1 data (articles, models, and parameters). Outbreaks were not extracted.

epireview 1.3.3

  • FEATURE: The argument to load_epidata is made case-insensitive. Addresses #96

epireview 1.3.2

  • BUG-FIX: Fixes #86 by removing a duplicated row. Also fixes an incorrectly entered method type for CFR, and incorrectly extracted population sizes.

epireview 1.3.1

  • BUG-FIX: Fixes #104 using readr::read_delim to read in parameter type short names

epireview 1.3.0

  • FEATURE
    • Updated lassa data available following updated literature search

epireview 1.3.0

  • MAJOR RELEASE
    • Improved messages when loading data via load_epidata
    • User-friendly getters for key epi parameters
    • Bug fixes

epireview 1.2.13

  • FEATURE: new function to format parameter dataset so that it can be input into meta-analysis of proportions.

epireview 1.2.12

  • FEATURE: Addresses #98 by including article_info as key column returned when parameter specific getters are invoked.

epireview 1.2.11

  • FEATURE: Adds a R-user friendly parameter name to the params table loaded via load_epidata. This also makes parameter names consistent across pathogens. Addresses #59.

epireview 1.2.10

  • FEATURE: Moves error logging cli package and improves warnings addressing #57 and #21

epireview 1.2.9

  • FEATURE: functions to get specific parameters for a given pathogen.

epireview 1.2.8

  • BUG FIX: Fixes #73 which caused rows of the params dataset to be dropped during if reordering the population
    country was NA.
  • FEATURE: reorder_studies can now reorder by any column in the params dataset

epireview 1.2.7

  • FEATURE: filter_df_for_metamean now includes rows with uncertainty types introduced specifically for SARS.

epireview 1.2.6

  • FEATURE: Added custom axis-label functionality to forest_plot()
  • BUG FIX: Fixed a bug whereby single uncertainty names would be used for paired uncertainty values.

epireview 1.2.5

  • FEATURE: addresses #80 by including doi in article columns merged with other key dfs.

epireview 1.2.4

  • BUG FIX: Updated outbreak and parameter column types. Fixes warnings being issued when lassa or ebola data were loaded.

epireview 1.2.3

  • BUG-FIX: Fixes Issue #56 where some article labels were NA because of an article being associated with multiple ids.

epireview 1.2.2

  • BUG-FIX: Fixes #71; file names are changed to match function names for consistency.

epireview 1.2.1

  • FEATURE: New function to assign QA score to articles in a simple and consistent manner.

epireview 1.2.0

  • Major release adding new features from versions 1.1.1, 1.1.2, and 1.13.

epireview 1.1.3

  • FEATURE: Add a function to extract parameters.

epireview 1.1.2

  • FEATURE: Add a function to create pretty article labels

epireview 1.1.1

  • FEATURE: Add filter_df_for_metamean function