Process data for delay table

Usage

data_param_table(pathogen, prepend = "", exclude = NA)

Arguments

pathogen: name of pathogen e.g. "marburg"
prepend: string to allow loading data in vignettes
exclude: article IDs to exclude

Value

processed data to use as input for delay_table(), risk_table() and seroprevalence_table()

Examples

df <- data_param_table(pathogen = "marburg", prepend = "", exclude = c(15, 17))
#> Rows: 70 Columns: 55
#> ── Column specification ────────────────────────────────────────────────────────
#> Delimiter: ","
#> chr (26): parameter_data_id, parameter_type, parameter_unit, parameter_value...
#> dbl (18): article_id, parameter_value, parameter_lower_bound, parameter_uppe...
#> lgl (11): distribution_type, distribution_par1_value, distribution_par1_type...
#> 
#> ℹ Use `spec()` to retrieve the full column specification for this data.
#> ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
#> Rows: 58 Columns: 25
#> ── Column specification ────────────────────────────────────────────────────────
#> Delimiter: ","
#> chr  (8): pathogen, first_author_first_name, article_title, doi, journal, no...
#> dbl (16): article_id, covidence_id, year_publication, volume, issue, page_fi...
#> lgl  (1): paper_copy_only
#> 
#> ℹ Use `spec()` to retrieve the full column specification for this data.
#> ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.