Package index • dust2

Systems

dust_system_create(): Create a dust system object

dust_system_state(): Extract system state

dust_system_set_state(): Set system state

dust_system_set_state_initial(): Set system state to initial conditions

dust_system_time(): Fetch system time

dust_system_set_time(): Set system time

dust_system_rng_state() dust_system_set_rng_state(): Fetch and set rng state

dust_system_update_pars(): Update parameters

Running

dust_system_run_to_time(): Run system

dust_system_simulate(): Simulate system

Other

dust_example(): Example generators

dust_system_reorder(): Reorder states

dust_system_internals(): Fetch system internals

dust_ode_control(): Create a dust_ode_control object.

Likelihood

dust_system_compare_data(): Compare system state against data

dust_filter_create(): Create a particle filter

dust_unfilter_create(): Create an unfilter

dust_likelihood_run(): Compute likelihood

Interact with system state after likelihood run

dust_likelihood_last_state(): Get likelihood state

dust_likelihood_last_trajectories(): Fetch last likelihood trajectories

dust_likelihood_last_snapshots(): Get likelihood snapshots

dust_likelihood_last_gradient(): Fetch last likelihood gradient

Interface to monty

dust_likelihood_monty(): Create monty model

Helpers

dust_filter_data(): Prepare data

Advanced use

dust_likelihood_copy(): Create copy of a dust likelihood object

dust_likelihood_rng_state() dust_likelihood_set_rng_state(): Get filter RNG state

Tools

dust_unpack_state() dust_unpack_index(): Unpack state

dust_openmp_support(): Information about OpenMP support

dust_openmp_threads(): Select number of threads

Browser-based debugging

dust_browser_enabled() dust_browser_verbosity() dust_browser_continue(): The dust debugger

Creation

dust_compile(): Compile a dust2 system

dust_package(): Create dust system in package