Create a particle filter object
Usage
dust_filter_create(
generator,
time_start,
data,
n_particles,
n_groups = NULL,
dt = 1,
index_state = NULL,
n_threads = 1,
preserve_group_dimension = FALSE,
seed = NULL
)
Arguments
- generator
A system generator object, with class
dust_system_generator
. The system must supportcompare_data
to be used with this function.- time_start
The start time for the simulation - this is typically before the first data point. Must be an integer-like value.
- data
The data to fit to. This can be a
data.frame
, in which case it will be passed into dust_filter_data for validation, or it can be a dust_filter_data-augmented data.frame. The times for comparison will be taken from this, andtime_start
must be no later than than the earliest time.- n_particles
The number of particles to run. Larger numbers will give lower variance in the likelihood estimate but run more slowly.
- n_groups
The number of parameter groups. If
NULL
, this will be taken fromdata
. If given, then the number of groups indata
will be checked against this number.- dt
The time step for discrete time systems, defaults to 1 if not given. It is an error to provide a non-NULL argument with continuous-time systems.
- index_state
An optional index of states to extract. If given, then we subset the system state on return. You can use this to return fewer system states than the system ran with, to reorder states, or to name them on exit (names present on the index will be copied into the rownames of the returned array).
- n_threads
Integer, the number of threads to use in parallelisable calculations. See Details.
- preserve_group_dimension
Logical, indicating if state and output from the system should preserve the group dimension in the case where a single group is run. In the case where more than one group is run, this argument has no effect as the dimension is always preserved.
- seed
Optionally, a seed. Otherwise we respond to R's RNG seed on initialisation.
Value
A dust_likelihood
object, which can be used with
dust_likelihood_run