All functions

PlasmoMAPI

PlasmoMAPI

assign_map()

Assign edges to the hex grid

calc_simple_hex_values()

Calculate map hex values without permutation

check_PlasmoMAPI_loaded()

Check that PlasmoMAPI package has loaded successfully

col_hotcold()

Red to blue colours

create_map()

Create map composed of hex tiles

get_barrier_intersect()

Get distance between points taking into account barriers

get_ellipse()

Calculate ellipse polygon coordinates from foci and eccentricity

get_significant_hexes()

Get significant hexes

get_spatial_distance()

Get great circle distance between spatial points

is.pm_project()

Determine if object is of class pm_project

is.pm_sim()

Determine if object is of class pm_sim

load_coords()

Load coordinates of sampling locations into PlasmoMAPI project

load_data()

Load pairwise data into PlasmoMAPI project

lonlat_to_bearing()

Calculate great circle distance and bearing between coordinates

overlay_points()

Add points to dynamic map

plot_coverage()

Plot hex coverage

plot_daily_states()

Plot daily counts of each host state from simulation

plot_dist()

Plot pairwise spatial distance against loaded statistic

plot_ellipses()

Plot network of nodes and ellipses

plot_leaflet()

Interactive hex map of PlasmoMAPI output

plot_map()

Plot hex map of PlasmoMAPI output

plot_network()

Plot network of nodes and edges

pm_analysis()

Perform PlasmoMAPI analysis

pm_file()

Import file

pm_project()

Define empty PlasmoMAPI project

print_full()

Print unclassed object

sim_falciparum()

Simulate genetic data from simple P. falciparum model