|
PlasmoMAPI
|
PlasmoMAPI |
|
assign_map()
|
Assign edges to the hex grid |
|
calc_simple_hex_values()
|
Calculate map hex values without permutation |
|
check_PlasmoMAPI_loaded()
|
Check that PlasmoMAPI package has loaded successfully |
|
col_hotcold()
|
Red to blue colours |
|
create_map()
|
Create map composed of hex tiles |
|
get_barrier_intersect()
|
Get distance between points taking into account barriers |
|
get_ellipse()
|
Calculate ellipse polygon coordinates from foci and eccentricity |
|
get_significant_hexes()
|
Get significant hexes |
|
get_spatial_distance()
|
Get great circle distance between spatial points |
|
is.pm_project()
|
Determine if object is of class pm_project |
|
is.pm_sim()
|
Determine if object is of class pm_sim |
|
load_coords()
|
Load coordinates of sampling locations into PlasmoMAPI project |
|
load_data()
|
Load pairwise data into PlasmoMAPI project |
|
lonlat_to_bearing()
|
Calculate great circle distance and bearing between coordinates |
|
overlay_points()
|
Add points to dynamic map |
|
plot_coverage()
|
Plot hex coverage |
|
plot_daily_states()
|
Plot daily counts of each host state from simulation |
|
plot_dist()
|
Plot pairwise spatial distance against loaded statistic |
|
plot_ellipses()
|
Plot network of nodes and ellipses |
|
plot_leaflet()
|
Interactive hex map of PlasmoMAPI output |
|
plot_map()
|
Plot hex map of PlasmoMAPI output |
|
plot_network()
|
Plot network of nodes and edges |
|
pm_analysis()
|
Perform PlasmoMAPI analysis |
|
pm_file()
|
Import file |
|
pm_project()
|
Define empty PlasmoMAPI project |
|
print_full()
|
Print unclassed object |
|
sim_falciparum()
|
Simulate genetic data from simple P. falciparum model |