Assign edges to the hex grid

Source: R/main.R

Given an PlasmoMAPI project with a hex map already created, determine which edges intersect each hex. Assumes an elliptical projection with the start- and end-points of an edge becoming the two foci of an ellipse.

assign_map(
  proj,
  eccentricity = 0.9,
  assign_type = 1,
  report_progress = TRUE,
  pb_markdown = FALSE
)

Arguments

proj

object of class pm_project.
eccentricity

eccentricity of ellipses, defined as half the distance between foci divided by the semi-major axis. \(e = sqrt{1 - b^2/a^2}\), where \(e\) is the eccentricity, \(a\) is the length of the semi-major axis, and \(b\) is the length of the semi-minor axis. Eccentricity ranges between 0 (perfect circle) and 1 (straight line between foci).
assign_type

Assignment method to use (1=standard, 2=new method with function for dealing with duplicate ellipses)
report_progress

if TRUE then a progress bar is printed to the console during the permutation testing procedure.
pb_markdown

whether to run progress bars in markdown mode, in which case they are updated once at the end to avoid large amounts of output.