Essentially just does squire::plot_pmcmc_sample. Not intended for use otherwise.

Essentially just does squire::plot_pmcmc_sample. Not intended for use otherwise.

Usage

# S3 method for rt_optimised
plot(
  x,
  q = c(0.025, 0.975),
  replicates = TRUE,
  summarise = FALSE,
  ci = TRUE,
  particle_fit = FALSE,
  ...
)

Arguments

x

rt_optimised output object

q

Quantiles for upper and lower of interval ribbon

replicates

Plot replicates

summarise

Logical, add summary line

ci

logical add confidence interval ribbon

particle_fit

For compatibility, if TRUE deaths are cumulative, else deaths are daily

...

placeholder for compatibility does nothing.