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Included for use in examples. Fitted to data up to 2021-11-16.

Usage

bhu_fit

Format

Nimue Simulation Object:

parameters

list of fixed parameters

model

the odin model

odin_parameters

list of fixed parameters in the format needed for the odin model

replicate_parameters

data-frame of a sample of the parameters estimated by the MCMC

pmcmc_results

full matrix of parameter estimates generated by the pmcmc

interventions

various other parameters used in the model, i.e. to generate Rt over-time from the replicates