All functions

beers_open_ended()

Beers Ordinary Graduation with Open-Ended Age Group

get_time_slice()

Slice a single year from model state

list_model_configurations()

List the avaialble model configurations

prepare_hc_leapfrog_projp()

Prepare child HIV projection parameters from Spectrum PJNZ

prepare_leapfrog_demp()

Prepare demographic inputs from Spectrum PJNZ

prepare_leapfrog_parameters()

Prepare leapfrog input parameters from Spectrum PJNZ

prepare_leapfrog_projp()

Prepare adult HIV projection parameters from Spectrum PJNZ

process_parameters_to_cpp()

Process parameters and convert from 1 based indexing in R to 0 based indexing in C++. Also add in any defaults/extra parameters, e.g. h_art_stage_dur.

process_parameters_to_r()

Process parameters and convert from 0 based indexing for C++ to 1 based indexing in R.

read_parameters()

Read parameters from HDF5 file format. This implicitly processes the parameters from C++ 0 based indexing to R 1 based indexing.

run_model()

Run leapfrog model fit

run_model_from_state()

Run leapfrog model fit from initial state

run_model_single_year()

Run leapfrog model fit for a single year

save_parameters()

Save parameters to HDF5 file format. This implicitly processes the parameters to C++ 0 based indexing.