case_data_calculate — case_data

Calculate reported case data from SEIRV model output

Usage

case_data_calculate(
  model_data = list(),
  n_p = 1,
  p_severe_inf = 0.12,
  p_death_severe_inf = 0.39,
  p_rep_severe = 1,
  p_rep_death = 1,
  output_type = "annual",
  deterministic = FALSE
)

Arguments

model_data: SEIRV output of Model_Run and similar functions
n_p: Particle to select from model_data
p_severe_inf: Probability of an infection being severe
p_death_severe_inf: Probability of a severe infection resulting in death
p_rep_severe: Probability of reporting of a severe but non-fatal infection
p_rep_death: Probability of reporting of a fatal infection
output_type: Type of output to produce: "annual" - Total reported cases and reported deaths by year "pts" - Total reported cases and reported deaths for every time point, summed over age groups "full" - Reported cases and reported deaths for every time point and age group
deterministic: Indicates whether to calculate results deterministically (TRUE) or stochastically (FALSE) '

Details

[TBA]