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To install YEP from GitHub, you will need to install the devtools package. If this is not already installed, run:

install.packages("devtools")

With devtools installed, run:

devtools::install_github("mrc-ide/YEP")

To check that the package loads, run:

For processing of SEIRV model output and the results of parameter estimation, the YEPaux package is also needed:

devtools::install_github("mrc-ide/YEPaux")
library(YEPaux)