Resources

• The workshop site: github.com/mrc-ide/odin-monty-workshop-2025
• The odin/monty book: mrc-ide.github.io/odin-monty

Files from the interactive sessions:

• odin.R - code from the introduction to odin
  • sir-basic-ode.R - basic ODE model
  • sir-basic.R - basic stochastic model
  • sir-incidence.R - adding incidence
  • sir-time.R - adding time dependence
  • sir-interpolate-constant.R - adding interpolation
  • sir-age.R - adding age structure
  • sir-age-vax.R - adding vaccination
• fitting.R - code from fitting
  • incidence.csv - data from the first example
  • sir-incidence.R - basic SIR model with incidence
  • sir-compare.R - adding comparison to data
  • sis.csv - data from the second example
  • sis.R - an SIS model