Function reference • hindsite

All functions

add_case_detection_cost(): Proactive case detection cost

add_facility_costs(): Facility costs

add_facility_visits(): Number of facility visits.

add_irs(): IRS commodities

add_irs_cost(): IRS costs

add_net_cost(): Add net costs

add_nets(): Add nets

add_pf_columns(): Add missing columns to pf model output

add_pfpr(): Add plasmodium falciparum prevalence

add_pmc(): Add PMC

add_pmc_cost(): Add PMC cost

add_pvpr(): Add plasmodium vivax prevalence

add_rtss(): Add RTS,S

add_rtss_cost(): Add rtss cost

add_rtss_total(): Add total number of RTS,S doses

add_smc(): Add SMC

add_smc_cost(): Add SMC cost

add_surveillance_cost(): Surveillance cost

add_tx(): Add treatment commodities.

add_tx_costs(): Treatment costs

add_tx_internal(): Add treatment commodities

add_year(): Add year column based on model timestep and baseline year

age_mid_point(): Add average age in range (assuming exponential demography)

aggregate_age(): Aggregate over age groups

beta_coverage_ci(): Beta distributed uncertainty for coverage-related commodity outputs

cases(): Add malaria cases

dalys(): DALYs

deaths(): Add malaria deaths

empty_pf(): Empty pf output

empty_pv(): Empty pv output

epi_uncertainty_approximation(): Uncertainty approximation for epi outcomes

exp_mid(): Approximate mean age within an age bracket assuming exponential age distribution

get_age_aggregated(): Age aggregated output

get_age_disaggregated(): Age disaggregated

get_pf(): Pf output

get_pv(): Pv output

link_interventions(): Link intervention inputs

link_pop(): Link PAR and adjust for age proportions

link_tx(): Link treatment coverage and add coverage uncertainty

mortality_rate(): Add mortality rate

non_malarial_fevers(): non_malarial_fevers

rates(): Scale outputs for modelled population size

rename_cols(): Add appropriate species suffix to column names

severe_cases(): Add malaria severe cases

wrangle_pf(): Wrangle pf model output

wrangle_pv(): Wrangle pv model output

yld(): Years of life with disability

yll(): Years of life lost