run model with single vaccine for input parameter sets, either from initialisation or from equilibrium, those with waned vaccines are eligible for revaccination (R), and return to the R stratum

run model with single vaccine for input parameter sets, either from initialisation or from equilibrium, those with waned vaccines are eligible for revaccination (R), and return to the R stratum

run_onevax_xvwr(
  tt,
  gono_params,
  init_params = NULL,
  dur = 1000,
  vea = 0,
  vei = 0,
  ved = 0,
  ves = 0,
  dur_revax = dur,
  vea_revax = vea,
  vei_revax = vei,
  ved_revax = ved,
  ves_revax = ves,
  vbe = 0,
  uptake = 0,
  strategy = "VbE",
  t_stop = 99
)

Arguments

tt	a numeric vector of times at which the model state is output
gono_params	list of gono params
init_params	= NULL
dur	scalar or numeric vector with same length as `gono_params` giving duration of the vaccine (in years)
vea	scalar or numeric vector with same length as `gono_params` giving efficacy of the vaccine against acquisition (between 0-1)
vei	scalar or numeric vector with same length as `gono_params` giving efficacy of the vaccine against infectiousness (between 0-1)
ved	scalar or numeric vector with same length as `gono_params` giving efficacy of the vaccine against duration (between 0-1)
ves	scalar or numeric vector with same length as `gono_params` giving efficacy of the vaccine against symptoms (between 0-1)
dur_revax	scalar or numeric vector with same length as `gono_params` giving duration of protection for revaccination, default to same as primary
vea_revax	scalar or numeric vector with same length as `gono_params` giving efficacy of revaccination against acquisition, default to same as primary
vei_revax	scalar or numeric vector with same length as `gono_params` giving efficacy of revaccination against infectiousness, default to same as primary
ved_revax	scalar or numeric vector with same length as `gono_params` giving efficacy of revaccination against duration of infection, default to same as primary
ves_revax	scalar or numeric vector with same length as `gono_params` giving efficacy of revaccination against symptoms, default to same as primary
vbe	scalar indicating pc of population vaccinated before entry (between 0-1)
uptake	scalar or numeric vector with same length as `gono_params` giving pc of population vaccinated as part of strategy
strategy	single character string in "VbE", "VoD", "VoD(H)", "VoA", "VoA(H)", "VoD(L)+VoA(H)"
t_stop	time at which vaccination should stop (years)

Value

A list of transformed model outputs