Run named odin model

run_model returns list with generator function automatically created given the odin model specified.

run_model(
  model = "odin_model",
  het_brackets = 5,
  age = c(0, 0.25, 0.5, 0.75, 1, 1.25, 1.5, 1.75, 2, 3.5, 5, 7.5, 10, 15, 20, 30, 40,
    50, 60, 70, 80),
  init_EIR = 10,
  init_ft = 0.4,
  country = NULL,
  admin2 = NULL,
  time = 100,
  ...
)

Arguments

model

Name of odin model used. Default = "odin_model"

het_brackets

Numeric for heterogeneity brackets

age

Age vector

init_EIR

Initial EIR for initial solution

init_ft

Initial ft for initial solution

country

Character of country in which admin unit exists

admin2

Character for admin level 2

time

Integer for length of simulation in days. Default = 100

...

Any other parameters needed for non-standard model. If they share the same name as any of the defined parameters model_param_list_create will stop. You can either write any extra parameters you like individually, e.g. create_r_model(extra1 = 1, extra2 = 2) and these parameters will appear appended to the returned list, or you can pass explicitly the ellipsis argument as a list created before, e.g. create_r_model(...=list(extra1 = 1, extra2 = 2))

Value

list of generator function, initial state, model parameters and generator