All functions
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assign_infection_history()
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Assign infection history list to covfefe project |
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covfefe_file()
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Import file |
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covfefe_project()
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Create covfefe project |
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define_hepatocyte_distribution()
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Define hepatocyte count distribution |
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define_oocyst_distribution()
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Define oocyst count distribution |
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delete_infection_history()
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Delete infection history list from covfefe project |
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plot_infecteds()
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Plot total infecteds |
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prune()
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Prune infection history |
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sample_hosts()
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Sample hosts from infection history |
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sim_genotypes()
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Simulate genotypes from pruned infection tree |
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sim_indiv()
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Simulate from simple individual-based model |