Prepare for simulation — spim_simulate

Prepare combined output for simulations. This carries out maintenance for the state - upgrading state if sircovid has updated (within reason), sampling starting parameters, reducing to selected regions and (potentially) adding empty strain or booster compartments.

spim_simulate_prepare(
  combined,
  simulate_parameters,
  n_par,
  regions = NULL,
  seed_voc = FALSE
)

Arguments

combined: A "combined" object
simulate_parameters: A nested list of simulation parameters
n_par: The number of parameters to sample
regions: Character vector of regions to use
seed_voc: Logical, indicating if seeding a new VOC