Construct a particle filter

spim_particle_filter(
  data,
  pars,
  control,
  deterministic = FALSE,
  initial = NULL,
  initial_date = 0
)

Arguments

data: Data, from spim_data
pars: Parameters, from spim_fit_pars_load
control: A list of control parameters including n_particles, n_threads and compiled_compare, typically the particle_filter element of the result of spim_control()
deterministic: Logical, indicating if the particle filter to built is to be run deterministically or stochastically
initial: Optionally a matrix of model state or an initial value function.
initial_date: The initial date to start from. Typically this should be 0 for a parent fit, and be the restart date for a restart date.