Create initial conditions for the lancelot model. This matches the interface required for mcstate
lancelot_initial(info, n_particles, pars)The result of running the $info() method on an
initialised basic model
The number of particles required. Currently only uniform initial seeding is implemented so this has no effect
A parameter list created by basic_parameters(); from
this list we will use the population element.
A numeric vector of initial conditions
p <- lancelot_parameters(sircovid_date("2020-02-07"), "england")
mod <- lancelot$new(p, 0, 10)
lancelot_initial(mod$info(), 10, p)
#> [1] 0 0 0 0 0 0 0 0
#> [9] 0 0 0 0 0 0 0 0
#> [17] 0 0 56550140 56550140 56550140 0 0 0
#> [25] 0 0 0 0 0 0 0 0
#> [33] 0 0 0 0 0 0 0 0
#> [41] 0 0 0 0 0 0 0 0
#> [49] 0 0 0 0 0 0 0 0
#> [57] 0 0 0 0 0 0 0 0
#> [65] 0 0 0 0 0 0 0 0
#> [73] 0 0 0 0 0 0 0 0
#> [81] 0 0 0 0 0 0 56550140 0
#> [89] 0 0 0 0 0 0 0 0
#> [97] 0 0 0 0 0 0 0 0
#> [105] 0 0 0 0 0 0 0 0
#> [113] 0 0 0 0 0 0 0 0
#> [121] 0 0 0 0 0 0 0 0
#> [129] 0 0 0 0 0 0 0 0
#> [137] 0 0 0 0 0 0 0 0
#> [145] 0 0 0 0 0 0 0 0
#> [153] 0 0 0 0 0 0 0 0
#> [161] 0 0 0 0 0 0 0 0
#> [169] 0 3239447 3539458 3435579 3115871 3472522 3729034 3782193
#> [177] 3695750 3433844 3596180 3832892 3719323 3154354 2767316 2797144
#> [185] 1959041 2600844 339674 339674 1 56550140 0 0
#> [193] 0 0 0 0 0 0 0 0
#> [201] 0 0 0 0 0 0 0 0
#> [209] 0 0 0 0 0 0 0 0
#> [217] 0 0 0 0 0 0 0 0
#> [225] 0 0 0 0 0 0 0 0
#> [233] 0 0 0 0 0 0 0 0
#> [241] 0 0 0 0 0 0 0 0
#> [249] 0 0 0 0 0 0 0 0
#> [257] 0 0 0 0 0 0 0 0
#> [265] 0 0 0 0 0 0 0 0
#> [273] 0 0 0 0 0 0 0 0
#> [281] 0 0 0 0 0 0 0 0
#> [289] 0 0 0 0 0 0 0 0
#> [297] 0 0 0 0 0 0 0 0
#> [305] 0 0 0 0 0 0 0 0
#> [313] 0 0 0 0 0 0 0 0
#> [321] 0 0 0 0 0 0 0 0
#> [329] 0 0 0 0 0 0 0 0
#> [337] 0 0 0 0 0 0 0 0
#> [345] 0 0 0 0 0 0 0 0
#> [353] 0 0 0 0 0 0 0 0
#> [361] 0 0 0 0 0 0 0 0
#> [369] 0 0 0 0 0 0 0 0
#> [377] 0 0 0 0 0 0 0 0
#> [385] 0 0 0 0 0 0 0 0
#> [393] 0 0 0 0 0 0 0 0
#> [401] 0 0 0 0 0 0 0 0
#> [409] 0 0 0 0 0 0 0 0
#> [417] 0 0 0 0 0 0 0 0
#> [425] 0 0 0 0 0 0 0 0
#> [433] 0 0 0 0 0 0 0 0
#> [441] 0 0 0 0 0 0 0 0
#> [449] 0 0 0 0 0 0 0 0
#> [457] 0 0 0 0 0 0 0 0
#> [465] 0 0 0 0 0 0 0 0
#> [473] 0 0 0 0 0 0 0 0
#> [481] 0 0 0 0 0 0 0 0
#> [489] 0 0 0 0 0 0 0 0
#> [497] 0 0 0 0 0 0 0 0
#> [505] 0 0 0 0 0 0 0 0
#> [513] 0 0 0 0 0 0 0 0
#> [521] 0 0 0 0 0 0 0 0
#> [529] 0 0 0 0 0 0 0 0
#> [537] 0 0 0 3239447 3539458 3435579 3115871 3472522
#> [545] 3729034 3782193 3695750 3433844 3596180 3832892 3719323 3154354
#> [553] 2767316 2797144 1959041 2600844 339674 339674 0 0
#> [561] 0 0 0 0 0 0 0 0
#> [569] 0 0 0 0 0 0 0 0
#> [577] 0 0 0 0 0 0 0 0
#> [585] 0 0 0 0 0 0 0 0
#> [593] 0 0 0 0 0 0 0 0
#> [601] 0 0 0 0 0 0 0 0
#> [609] 0 0 0 0 0 0 0 0
#> [617] 0 0 0 0 0 0 0 0
#> [625] 0 0 0 0 0 0 0 0
#> [633] 0 0 0 0 0 0 0 0
#> [641] 0 0 0 0 0 0 0 0
#> [649] 0 0 0 0 0 0 0 0
#> [657] 0 0 0 0 0 0 0 0
#> [665] 0 0 0 0 0 0 0 0
#> [673] 0 0 0 0 0 0 0 0
#> [681] 0 0 0 0 0 0 0 0
#> [689] 0 0 0 0 0 0 0 0
#> [697] 0 0 0 0 0 0 0 0
#> [705] 0 0 0 0 0 0 0 0
#> [713] 0 0 0 0 0 0 0 0
#> [721] 0 0 0 0 0 0 0 0
#> [729] 0 0 0 0 0 0 0 0
#> [737] 0 0 0 0 0 0 0 0
#> [745] 0 0 0 0 0 0 0 1
#> [753] 0 0 0 0 0 0 0 0
#> [761] 0 0 0 0 0 0 0 0
#> [769] 0 0 0 0 0 0 0 0
#> [777] 0 0 0 0 0 0 0 0
#> [785] 0 0 0 0 0 0 0 0
#> [793] 0 0 0 0 0 0 0 0
#> [801] 0 0 0 0 0 0 0 0
#> [809] 0 0 0 0 0 0 0 0
#> [817] 0 0 0 0 0 0 0 0
#> [825] 0 0 0 0 0 0 0 0
#> [833] 0 0 0 0 0 0 0 0
#> [841] 0 0 0 0 0 0 0 0
#> [849] 0 0 0 0 0 0 0 0
#> [857] 0 0 0 0 0 0 0 0
#> [865] 0 0 0 0 0 0 0 0
#> [873] 0 0 0 0 0 0 0 0
#> [881] 0 0 0 0 0 0 0 0
#> [889] 0 0 0 0 0 0 0 0
#> [897] 0 0 0 0 0 0 0 0
#> [905] 0 0 0 0 0 0 0 0
#> [913] 0 0 0 0 0 0 0 0
#> [921] 0 0 0 0 0 0 0 0
#> [929] 0 0 0 0 0 0 0 0
#> [937] 0 0 0 0 0 0 0 0
#> [945] 0 0 0 0 0 0 0 0
#> [953] 0 0 0 0 0 0 0 0
#> [961] 0 0 0 0 0 0 0 0
#> [969] 0 0 0 0 0 0 0 0
#> [977] 0 0 0 0 0 0 0 0
#> [985] 0 0 0 0 0 0 0 0
#> [993] 0 0 0 0 0 0 0 0
#> [1001] 0 0 0 0 0 0 0 0
#> [1009] 0 0 0 0 0 0 0 0
#> [1017] 0 0 0 0 0 0 0 0
#> [1025] 0 0 0 0 0 0 0 0
#> [1033] 0 0 0 0 0 0 0 0
#> [1041] 0 0 0 0 0 0 0 0
#> [1049] 0 0 0 0 0 0 0 0
#> [1057] 0 0 0 0 0 0 0 0
#> [1065] 0 0 0 0 0 0 0 0
#> [1073] 0 0 0 0 0 0 0 0
#> [1081] 0 0 0 0 0 0 0 0
#> [1089] 0 0 0 0 0 0 0 0
#> [1097] 0 0 0 0 0 0 0 0
#> [1105] 0 0 0 0 0 0 0 0
#> [1113] 0 0 0 0 0 0 0 0
#> [1121] 0 0 0 0 0 0 0 0
#> [1129] 0 0 0 0 0 0 0 0
#> [1137] 0 0 0 0 0 0 0 0
#> [1145] 0 0 0 0 0 0 0 0
#> [1153] 0 0 0 0 0 0 0 0
#> [1161] 0 0 0 0 0 0 0 0
#> [1169] 0 0 0 0 0 0 0 0
#> [1177] 0 0 0 0 0 0 0 0
#> [1185] 0 0 0 0 0 0 0 0
#> [1193] 0 0 0 0 0 0 0 0
#> [1201] 0 0 0 0 0 0 0 0
#> [1209] 0 0 0 0 0 0 0 0
#> [1217] 0 0 0 0 0 0 0 0
#> [1225] 0 0 0 0 0 0 0 0
#> [1233] 0 0 0 0 0 0 0 0
#> [1241] 0 0 0 0 0 0 0 0
#> [1249] 0 0 0 0 0 0 0 0
#> [1257] 0 0 0 0 0 0 0 0
#> [1265] 0 0 0 0 0 0 0 0
#> [1273] 0 0 0 0 0 0 0 0
#> [1281] 0 0 0 0 0 0 0 0
#> [1289] 0 0 0 0 0 0 0 0
#> [1297] 0 0 0 0 0 0 0 0
#> [1305] 0 0 0 0 0 0 0 0
#> [1313] 0 0 0 0 0 0 0 0
#> [1321] 0 0 0 0 0 0 0 0
#> [1329] 0 0 0 0 0 0 0 0
#> [1337] 0 0 0 0 0 0 0 0
#> [1345] 0 0 0 0 0 0 0 0
#> [1353] 0 0 0 0 0 0 0 0
#> [1361] 0 0 0 0 0 0 0 0
#> [1369] 0 0 0 0 0 0 0 0
#> [1377] 0 0 0 0 0 0 0 0
#> [1385] 0 0 0 0 0 0 0 0
#> [1393] 0 0 0 0 0 0 0 0
#> [1401] 0 0 0 0 0 0 0 0
#> [1409] 0 0 0 0 0 0 0 0
#> [1417] 0 0 0 0 0 0 0 0
#> [1425] 0 0 0 0 0 0 0 0
#> [1433] 0 0 0 0 0 0 0 0
#> [1441] 0 0 0 0 0 0 0 0
#> [1449] 0 0 0 0 0 0 0 0
#> [1457] 0 0 0 0 0 0 0 0
#> [1465] 0 0 0 0 0 0 0 0
#> [1473] 0 0 0 0 0 0 0 0
#> [1481] 0 0 0 0 0 0 0 0
#> [1489] 0 0 0 0 0 0 0 0
#> [1497] 0 0 0 0 0 0 0 0
#> [1505] 0 0 0 0 0 0 0 0
#> [1513] 0 0 0 0 0 0 0 0
#> [1521] 0 0 0 0 0 0 0 0
#> [1529] 0 0 0 0 0 0 0 0
#> [1537] 0 0 0 0 0 0 0 0
#> [1545] 0 0 0 0 0 0 0 0
#> [1553] 0 0 0 0 0 0 0 0
#> [1561] 0 0 0 0 0 0 0 0
#> [1569] 0 0 0 0 0 0 0 0
#> [1577] 0 0 0 0 0 0 0 0
#> [1585] 0 0 0 0 0 0 0 0
#> [1593] 0 0 0 0 0 0 0 0
#> [1601] 0 0 0 0 0 0 0 0
#> [1609] 0 0 0 0 0 0 0 0
#> [1617] 0 0 0 0 0 0 0 0
#> [1625] 0 0 0 0 0 0 0 0
#> [1633] 0 0 0 0 0 0 0 0
#> [1641] 0 0 0 0 0 0 0 0
#> [1649] 0 0 0 0 0 0 0 0
#> [1657] 0 0 0 0 0 0 0 0
#> [1665] 0 0 0 0 0 0 0 0
#> [1673] 0 0 0 0 0 0 0 0
#> [1681] 0 0 0 0 0 0 0 0
#> [1689] 0 0 0 0 0 0 0 0
#> [1697] 0 0 0 0 0 0 0 0
#> [1705] 0 0 0 0 0 0 0 0
#> [1713] 0 0 0 0 0 0 0 0
#> [1721] 0 0 0 0 0 0 0 0
#> [1729] 0 0 0 0 0 0 0 0
#> [1737] 0 0 0 0 0 0 0 0
#> [1745] 0 0 0 0 0 0 0 0
#> [1753] 0 0 0 0 0 0 0 0
#> [1761] 0 0 0 0 0 0 0 0
#> [1769] 0 0 0 0 0 0 0 0
#> [1777] 0 0 0 0 0 0 0 0
#> [1785] 0 0 0 0 0 0 0 0
#> [1793] 0 0 0 0 0 0 0 0
#> [1801] 0 0 0 0 0 0 0 0
#> [1809] 0 0 0 0