Combine Rt across multiple runs.
combine_rt(rt, samples, rank = TRUE, weight = "infections_inc")A list of Rt calculations from
lancelot_Rt_trajectories() (though any Rt calculation that
confirms to this will work)
A list of samples from mcstate::pmcmc
A boolean deciding whether to rank trajectories by increasing incidence or not before combining Rt estimates
A string specifying what trajectory to use for weighting, defaults to "infections_inc" (used for Rt calculation)
A list of Rt output in the same structure as the first
element of rt. All Rt estimates will be aggregated across
regions (or whatever else you are aggregating on) based on the
parameters in samples.