plot_coverage.Rd
Plot coverage gaps in data
plot_coverage(dat, type = "o", pch = 20, ylim = c(0, 100), xlab = "Coverage (unique reads)", ylab = "data completeness (%)", log = "x", ...)
dat | MIP data. The data must have the following variables:
|
---|---|
type | 1-character string giving the type of plot desired. The
following values are possible, for details, see |
pch | Either an integer or a single character specifying a symbol to be
used as the default in plotting points. See |
ylim | the y limits of the plot. |
xlab | a label for the x axis, defaults to a description of |
ylab | a label for the y axis, defaults to a description of |
log | a character string which contains |
... | other arguments to |
Plot a line graph showing the percentage of sites that have more than a given number of unique reads (coverage).