Filter data

Filter data based on coverage

filter_coverage(dat, min_coverage = 2)

Arguments

dat	MIP data. The data must have the following variables: Coverage : The total read coverage as numerics
min_coverage	Numeric for the minimum required coverage. Default = 2

dat

MIP data. The data must have the following variables:

min_coverage

Numeric for the minimum required coverage. Default = 2

The MIP dataset is filtered to remove all loci that have less than the minimum required coverage.

dat <- dummy_data()
dat <- filter_misc(dat)
dat2 <- filter_coverage(dat, min_coverage = 5)
dim(dat2)[1] < dim(dat)[1]
#> [1] TRUE