MIPanalyzer.RdThis package can be used to read in raw molecular inversion probe (MIP) data from vcf into a format that is convenient to work with. Data can be filtered based on counts, frequencies, missingness or other criteria. Filtered data can be analysed by common methods including PCA and various pairwise genetic metrics, and can be visualised in multiple ways. This package is intended to evolve as new MIP analyses are needed, thereby making it easy to repeat common analyses as new data becomes available.
Filtering and analysis of MIP data.